Timeline

Fine-tuned rank-8 LoRA adapters on about 10,000 biology/biomedical examples for 500 steps on an NVIDIA T4. Held-out loss dropped 23%, but overall benchmark accuracy stayed flat — wrote up why instead of overstating the win.

Third public release of Atlas in 8 months. Built persistent Obsidian-vault memory, voice/chat/WhatsApp interaction, multimodal attachments, and audited tool use across local and API-hosted models — designed for privacy- and cost-conscious on-device workflows.

WebLLM runs a quantized Gemma 4 E2B vision-language model entirely client-side via WebGPU/ONNX Runtime — on-screen visual Q&A with no backend server. The Protein Sequence Transformer is an autoregressive PyTorch model that generates LuxR-family protein sequences. Also started mapping steady-state flux control across 10,000 parameter sets in Tellurium for the Sauro lab.

Developed a reaction-based systems biology model of the RhlR/RhlI pathway using Hill-function kinetics, investigating positive-feedback-driven signal amplification through simulations of C4-HSL production, receptor binding, and degradation dynamics.

Set up this site as a running, dated log of what I ship, win, and learn — projects, awards, and news all in one place instead of scattered across a resume that goes stale the moment I update it.

Founded Cells and Civics as a platform to publish independent computational biology studies, AlphaFold structural analyses, and literature reviews on microbiology. Around the same time, started designing and building full websites for nonprofit organizations as a freelance web developer.

Built a multi-model council orchestration layer that evaluates actions before executing them, aimed at making OS-level automation safer to actually use.